BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.
This is done with git, for example in directory $bpp_dir:
Bio++ libraries need to be installed beforehand, for example in $bpp_dir. The needed libraries are bpp-core, bpp-seq, bpp-phyl, bpp-popgen.
After, you proceed:
cd bppsuite
cmake -DCMAKE_INSTALL_PREFIX=$bpp_dir ./ # prepare compilation
make # compile
make install # move files to the installation directory (this will create a $bpp_dir/bin/ directory)
That's it ! The executables are now installed in $bpp_dir/bin.
Without the option -DCMAKE_INSTALL_PREFIX=$bpp_dir, the standard /usr/local directory will be used, and the executables installed in /usr/local/bin, a location which requires superuser access rights.
Bppsuite executables should know where the dynamic libraries are. A way to check it is the command:
To configure this, set in the shell environment variable :
(and source the configuration file or relog).
You can generate the pdf documentation by typing :
and in html by typing:
Many examples are available in the subdirectory of Examples.
Documentation can be found at: https://pbil.univ-lyon1.fr/bpp-doc/bppsuite/bppsuite.html